NORBIS GENESTAT course 2018



Take-home exam ->



Monday 4 June

R introduction

genestat_R_intro.html
genestat_R_intro.rmd
data.ped
data.map
data_a_intro_R.dat
data_b_intro_R.dat
data_c_intro_R.dat

General intro to genetic epidemiology

Outline of general lectures on gen epi
NORBIS_Monday_4June2018_Lecture1_Part1_30June2018.ppt



Tuesdag 5 June

General intro to genetic epidemiology

NORBIS_Monday_4June2018_Lecture2_30June2018.ppt
NORBIS_Tuesday_5June2018_lecture3_30May2018.ppt

Registry studies, familial clustering, recurrence risk

Registry studies etc. (Rolv Terje Lie)



Wednesday 6 June

Post-processing of results

Using Haploview. Primer to meta-GWAS.

Haplin data introduction

Reading_data_in_haplin.html
Reading_data_in_haplin.Rmd
add_cov.dat
data1.map
HAPLIN.trialdata.txt
HAPLIN.trialdata2.txt

Haplin lectures


pres.ped
pres.map

Haplin
Data preparation
Standard Haplin run
Save and summarize results
Run Haplin with haplotypes
Design choices

Power and sample size calculations

PowerCalculations

Hetionet lecture

Hetionet_analyses_JR_Genestat2018.pdf
Hetionet_querying_in_Cypher.html
Hetionet_querying_in_Cypher.Rmd



Thursday 7 June

Special inheritance in Haplin

Special effects & X

EWAS/methylation

You have probably already downloaded the EWAS data.

EWAS lecture 1 Bohlin
EWAS lecture 2 Bohlin
R exercises

Mendelian randomization

Presentation by Bjørn Olav Åsvold



Friday 8 June

Gene-environment interactions

GxE

Multiple testing adjustments

Multiple testing

Exercises power/sample size

Power_exercises.R

Exercises QC/Helgeland

norbis-qc

Clefts genetics “case study”

Lecture by RT Lie. To obtain a copy of the lecture, please contact Rolv.Lie@uib.no directly.



Schedule (as of 8 June) ->



Dinner information ->



Course preparations ->



Course Venue ->



Course data to download ->